extract characters between two commas?Text processing - join every two lines with commasRemove entire row in a file if first column is repeatedMerging two files, one column at a timeJoin two textfiles on 1st column keeping order and unpairable lines from 1st fileHow to print lines if two fields have identical values?Delete lines that matches a string before commahow to remove comma and strings after a comma in a file?Fastest way to sum Nth column in text fileHow to extract the first row for each entry in the first column?Compare two files and get unmatched rows from the second file based on first and second column

Why is my log file so massive? 22gb. I am running log backups

I see my dog run

What happens when a metallic dragon and a chromatic dragon mate?

Wild Shape Centaur Into a Giant Elk: do their Charges stack?

Are objects structures and/or vice versa?

Why does this relative pronoun not take the case of the noun it is referring to?

Is Social Media Science Fiction?

Finding files for which a command fails

Mapping arrows in commutative diagrams

Extreme, but not acceptable situation and I can't start the work tomorrow morning

extract characters between two commas?

Information to fellow intern about hiring?

How to manage monthly salary

Is it legal to have the "// (c) 2019 John Smith" header in all files when there are hundreds of contributors?

How to make payment on the internet without leaving a money trail?

Patience, young "Padovan"

Where to refill my bottle in India?

How can I add custom success page

What do you call something that goes against the spirit of the law, but is legal when interpreting the law to the letter?

Latin words with no plurals in English

Crop image to path created in TikZ?

Is "plugging out" electronic devices an American expression?

Eliminate empty elements from a list with a specific pattern

Is this food a bread or a loaf?



extract characters between two commas?


Text processing - join every two lines with commasRemove entire row in a file if first column is repeatedMerging two files, one column at a timeJoin two textfiles on 1st column keeping order and unpairable lines from 1st fileHow to print lines if two fields have identical values?Delete lines that matches a string before commahow to remove comma and strings after a comma in a file?Fastest way to sum Nth column in text fileHow to extract the first row for each entry in the first column?Compare two files and get unmatched rows from the second file based on first and second column






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;








1















I have a file with ~ 3 million rows, here is the first few lines of my file:



head out.txt
NA
NA
NA
NA
NA
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753,gene85754
gene85752,gene85753,gene85754
gene85752,gene85753,gene85754
gene85752,gene85753,gene85754
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752,gene85753
gene85752
gene85752


For those rows that are separated by ",", I want to keep everything after the first comma and before the second comma.
This is my desired output:



outgood.txt
NA
NA
NA
NA
NA
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85753
gene85752
gene85752









share|improve this question




























    1















    I have a file with ~ 3 million rows, here is the first few lines of my file:



    head out.txt
    NA
    NA
    NA
    NA
    NA
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753,gene85754
    gene85752,gene85753,gene85754
    gene85752,gene85753,gene85754
    gene85752,gene85753,gene85754
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752,gene85753
    gene85752
    gene85752


    For those rows that are separated by ",", I want to keep everything after the first comma and before the second comma.
    This is my desired output:



    outgood.txt
    NA
    NA
    NA
    NA
    NA
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85753
    gene85752
    gene85752









    share|improve this question
























      1












      1








      1








      I have a file with ~ 3 million rows, here is the first few lines of my file:



      head out.txt
      NA
      NA
      NA
      NA
      NA
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752
      gene85752


      For those rows that are separated by ",", I want to keep everything after the first comma and before the second comma.
      This is my desired output:



      outgood.txt
      NA
      NA
      NA
      NA
      NA
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85752
      gene85752









      share|improve this question














      I have a file with ~ 3 million rows, here is the first few lines of my file:



      head out.txt
      NA
      NA
      NA
      NA
      NA
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753,gene85754
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752,gene85753
      gene85752
      gene85752


      For those rows that are separated by ",", I want to keep everything after the first comma and before the second comma.
      This is my desired output:



      outgood.txt
      NA
      NA
      NA
      NA
      NA
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85753
      gene85752
      gene85752






      text-processing awk






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked 3 hours ago









      Anna1364Anna1364

      439213




      439213




















          3 Answers
          3






          active

          oldest

          votes


















          8














          Since cut prints non-delimited lines by default the following works



          cut -f2 -d, file





          share|improve this answer


















          • 1





            It's nice when someone remember the little quirks of standard tools.

            – Kusalananda
            2 hours ago


















          1














          awk -F, 'NF > 1 $1 = $2 print $1 ' file


          This uses awk to parse the file as lines consisting of comma-delimited fields.



          The code detects when there is more than a single field on a line, and when there is, the first field is replaced by the second field. The first field, either unmodified or modified by the conditional code, is then printed.






          share|improve this answer























          • With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

            – glenn jackman
            1 hour ago











          • @glennjackman Well, the cut solution would be even faster in any case.

            – Kusalananda
            1 hour ago


















          0














          awk -F, 'NF == 1 print $1
          NF > 1 print $2' filename


          This will print just the first string if there is no comma, second string if there is one or more comma.






          share|improve this answer























            Your Answer








            StackExchange.ready(function()
            var channelOptions =
            tags: "".split(" "),
            id: "106"
            ;
            initTagRenderer("".split(" "), "".split(" "), channelOptions);

            StackExchange.using("externalEditor", function()
            // Have to fire editor after snippets, if snippets enabled
            if (StackExchange.settings.snippets.snippetsEnabled)
            StackExchange.using("snippets", function()
            createEditor();
            );

            else
            createEditor();

            );

            function createEditor()
            StackExchange.prepareEditor(
            heartbeatType: 'answer',
            autoActivateHeartbeat: false,
            convertImagesToLinks: false,
            noModals: true,
            showLowRepImageUploadWarning: true,
            reputationToPostImages: null,
            bindNavPrevention: true,
            postfix: "",
            imageUploader:
            brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
            contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
            allowUrls: true
            ,
            onDemand: true,
            discardSelector: ".discard-answer"
            ,immediatelyShowMarkdownHelp:true
            );



            );













            draft saved

            draft discarded


















            StackExchange.ready(
            function ()
            StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2funix.stackexchange.com%2fquestions%2f511284%2fextract-characters-between-two-commas%23new-answer', 'question_page');

            );

            Post as a guest















            Required, but never shown

























            3 Answers
            3






            active

            oldest

            votes








            3 Answers
            3






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            8














            Since cut prints non-delimited lines by default the following works



            cut -f2 -d, file





            share|improve this answer


















            • 1





              It's nice when someone remember the little quirks of standard tools.

              – Kusalananda
              2 hours ago















            8














            Since cut prints non-delimited lines by default the following works



            cut -f2 -d, file





            share|improve this answer


















            • 1





              It's nice when someone remember the little quirks of standard tools.

              – Kusalananda
              2 hours ago













            8












            8








            8







            Since cut prints non-delimited lines by default the following works



            cut -f2 -d, file





            share|improve this answer













            Since cut prints non-delimited lines by default the following works



            cut -f2 -d, file






            share|improve this answer












            share|improve this answer



            share|improve this answer










            answered 2 hours ago









            iruvariruvar

            12.3k63062




            12.3k63062







            • 1





              It's nice when someone remember the little quirks of standard tools.

              – Kusalananda
              2 hours ago












            • 1





              It's nice when someone remember the little quirks of standard tools.

              – Kusalananda
              2 hours ago







            1




            1





            It's nice when someone remember the little quirks of standard tools.

            – Kusalananda
            2 hours ago





            It's nice when someone remember the little quirks of standard tools.

            – Kusalananda
            2 hours ago













            1














            awk -F, 'NF > 1 $1 = $2 print $1 ' file


            This uses awk to parse the file as lines consisting of comma-delimited fields.



            The code detects when there is more than a single field on a line, and when there is, the first field is replaced by the second field. The first field, either unmodified or modified by the conditional code, is then printed.






            share|improve this answer























            • With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

              – glenn jackman
              1 hour ago











            • @glennjackman Well, the cut solution would be even faster in any case.

              – Kusalananda
              1 hour ago















            1














            awk -F, 'NF > 1 $1 = $2 print $1 ' file


            This uses awk to parse the file as lines consisting of comma-delimited fields.



            The code detects when there is more than a single field on a line, and when there is, the first field is replaced by the second field. The first field, either unmodified or modified by the conditional code, is then printed.






            share|improve this answer























            • With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

              – glenn jackman
              1 hour ago











            • @glennjackman Well, the cut solution would be even faster in any case.

              – Kusalananda
              1 hour ago













            1












            1








            1







            awk -F, 'NF > 1 $1 = $2 print $1 ' file


            This uses awk to parse the file as lines consisting of comma-delimited fields.



            The code detects when there is more than a single field on a line, and when there is, the first field is replaced by the second field. The first field, either unmodified or modified by the conditional code, is then printed.






            share|improve this answer













            awk -F, 'NF > 1 $1 = $2 print $1 ' file


            This uses awk to parse the file as lines consisting of comma-delimited fields.



            The code detects when there is more than a single field on a line, and when there is, the first field is replaced by the second field. The first field, either unmodified or modified by the conditional code, is then printed.







            share|improve this answer












            share|improve this answer



            share|improve this answer










            answered 2 hours ago









            KusalanandaKusalananda

            140k17261435




            140k17261435












            • With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

              – glenn jackman
              1 hour ago











            • @glennjackman Well, the cut solution would be even faster in any case.

              – Kusalananda
              1 hour ago

















            • With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

              – glenn jackman
              1 hour ago











            • @glennjackman Well, the cut solution would be even faster in any case.

              – Kusalananda
              1 hour ago
















            With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

            – glenn jackman
            1 hour ago





            With a big file, this would probably be faster: awk -F, 'print(NF>1 ? $2 : $1)' -- since you won't have to rewrite $0

            – glenn jackman
            1 hour ago













            @glennjackman Well, the cut solution would be even faster in any case.

            – Kusalananda
            1 hour ago





            @glennjackman Well, the cut solution would be even faster in any case.

            – Kusalananda
            1 hour ago











            0














            awk -F, 'NF == 1 print $1
            NF > 1 print $2' filename


            This will print just the first string if there is no comma, second string if there is one or more comma.






            share|improve this answer



























              0














              awk -F, 'NF == 1 print $1
              NF > 1 print $2' filename


              This will print just the first string if there is no comma, second string if there is one or more comma.






              share|improve this answer

























                0












                0








                0







                awk -F, 'NF == 1 print $1
                NF > 1 print $2' filename


                This will print just the first string if there is no comma, second string if there is one or more comma.






                share|improve this answer













                awk -F, 'NF == 1 print $1
                NF > 1 print $2' filename


                This will print just the first string if there is no comma, second string if there is one or more comma.







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered 2 hours ago









                unxnutunxnut

                3,79721120




                3,79721120



























                    draft saved

                    draft discarded
















































                    Thanks for contributing an answer to Unix & Linux Stack Exchange!


                    • Please be sure to answer the question. Provide details and share your research!

                    But avoid


                    • Asking for help, clarification, or responding to other answers.

                    • Making statements based on opinion; back them up with references or personal experience.

                    To learn more, see our tips on writing great answers.




                    draft saved


                    draft discarded














                    StackExchange.ready(
                    function ()
                    StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2funix.stackexchange.com%2fquestions%2f511284%2fextract-characters-between-two-commas%23new-answer', 'question_page');

                    );

                    Post as a guest















                    Required, but never shown





















































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown

































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown







                    Popular posts from this blog

                    Isurus Índice Especies | Notas | Véxase tamén | Menú de navegación"A compendium of fossil marine animal genera (Chondrichthyes entry)"o orixinal"A review of the Tertiary fossil Cetacea (Mammalia) localities in wales port taf Museum Victoria"o orixinalThe Vertebrate Fauna of the Selma Formation of Alabama. Part VII. Part VIII. The Mosasaurs The Fishes50419737IDsh85068767Isurus2548834613242066569678159923NHMSYS00210535017845105743

                    Is 1 ppb equal to 1 μg/kg? Announcing the arrival of Valued Associate #679: Cesar Manara Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern)How to determine the concentration after a dilution with Beer's law?What would be SMILES notation for a compound with delocalized bonding?Amount of substance of a molecule in a solute the same as amount of substance of constituent elements?Interpreting notation format 1.64E-02 from particulate emission dataWhat was the lithium concentration in 1940's 7-Up?Why are osmoles not considered SI units?Why is Ka constant when volume is increased?Should residual sodium be considered in measuring sodium content of sweat?Concentration of mercury in bodyConversion from a PPB value to µg/m3 of Isobutylene

                    What does “fit” mean in this sentence? Announcing the arrival of Valued Associate #679: Cesar Manara Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern)How does 'jealousy' mean 'suspicion'?What does “not so say” mean?Does “somebody of my caliber” mean the speaker themselves?“accounting for high fasting blood glucose”- help about the meaningWhat does “cloaked by NDA” mean in this context?What does it mean by 'community ownership' in this context?What does “human corroborators” mean in this context?What does “everything but a fire” mean in this context?What does “run” mean here?What does “rabbited” mean/imply in this sentence?